Uluslararası Hakemli Dergilerde Yayınlanan Makaleler:

Karaca M., Aydin A, Ince AG. 2019. Cytosine Methylation Polymorphisms in Cotton Using TD-MS-RAPD- PCR. Modern Phytomorphology, 13: 13-19.

Aydın A., Ince A.G., Uygur Gocer E., Karaca M. 2018. Cotton single seed DNA extraction without the use of enzymes and liquid nitrogen. Fresenius Environmental Bulletin, 27(10): 6722-6726.

İnal B., Aydın A., İnce A.G., Karaca M. 2017. Farklı Hizalama Araçlarıyla Hizalanmış ITS1 Gen Bölgesine Dayalı Kıta Pamuğu Türleri Arasındaki Genetik İlişkiler. Moleküler Biyoloji ve Biyoteknoloji Dergisi (“Journal of Molecular Biology and Biotechnology”), 2: 1-6.

Ince AG., Karaca M., Uygur Göçer E., Aydin A. 2017. Descriptive statistics and PIC values of genomic- and transcriptomic-microsatellites in several plant species. Journal of Scientific and Engineering Research, 4(11): 236-246.

Karaca M., Ince AG., Uygur Göçer E., Aydin A. 2017. Microsatellite distribution and densities in promoter and gene body entities of some plant genes. Journal of Scientific and Engineering Research, 4(11): 154-163.

Karaca M., Ince AG., Uygur Göçer E., Aydin A., 2016. Bisulfite Primer Pairs for Analysis of Cotton (Gossypium spp.) DNA Methylation. Journal of Scientific and Engineering Research, 3(3): 656-662.

Karaca M., Ince AG., Uygur Göçer E., Aydin A., 2016. Exonic and Intronic DNA Methylation Differences in a Fiber Specific Gene of Pima Cotton (Gossypium barbadense L.). Journal of Scientific and Engineering Research, 3(4): 478-486.

Aydin, A. and Karaca, M. 2016. An alternative way to assign the chromosome location of genes/markers in cotton. FEBS Journal, 283 : 335-335.

Ince, A.G., Karaca, M., Aydin, A., Y. Elmasulu S., Tugut, K. 2015. Microsatellites for genetic and taxonomic research on thyme .(Thymus L.). Turkhish Journal of Biology, 39: 147-159.

Karaca, M., Ince, A.G., Aydin, A., Ay S.T. 2013. Cross-genera transferable e-microsatellite markers for 12 genera of Lamiaceae family. Journal of the Science of Foof and Agriculture, 93(8) : 1869-1979.

Ince, A.G., Karaca, M., Aydin, A. 2011. Comparison of multiple DNA aligment algorithms for Labiatae molecular phylgeny inferences. Planta Medica, 12:1280.

Ulusal hakemli dergilerde yayımlanan makaleler:

Uluslararası Bilimsel Toplantılarda Sunulan ve Bildiri Kitaplarında Basılan Bildiriler:

Aydin, A., Karaca, M., Ince, A.G. 2019. Bulked Versus Single Seed for Genetic Relationship Studies in Cotton (Gossypium hirsutum L.). V. Sciences, Thecnology and Innovaton Congress. 17-21 April, Page; 134, Alanya/TURKEY.

Ince, A.G., Aydin, A., Karaca, M. 2019. Minig Tandem Repaets and Development of Microsatellite Markers for Sesame (Sesamun indicum L.). V. Sciences, Thecnology and Innovaton Congress. 17-21 April, Page; 134, Alanya/TURKEY.

Aydin, A., Karaca, M. and Ince, A.G. 2019. Confirmed Polymorphic Microsatellite Primer Pairs Suitable for Genetic Studies of Cotton Varieties Grown in Turkey. International Congress on Agriculture and Forestry Research. 8-10 April, Page; 476-483, Marmaris/TURKEY.

Karaca, M., Aydin, A. and Ince, A.G. 2019. Identification of a Putative Epiallele Expressed in 25 DPA Cotton Fiber. International Congress on Agriculture and Forestry Research. 8-10 April, Page; 493-500, Marmaris/TURKEY.

Aydin, A., Karaca, M. 2019. Identification of Chromosome Substitution Lines in Cotton. International Congress on Agriculture and Forestry Research. 8-10 April, Page; 501-506, Marmaris/TURKEY.

Karaca, M., Aydin, A. and Ince, A.G. 2019. Comparative Studies of Capillary Gel and Agarose Gel Electrophoresis. International Congress on Agriculture and Forestry Research. 8-10 April, Page; 507-513, Marmaris/TURKEY.

Aydin, A., Karaca, M. and Ince, A.G. 2019. Comparison of Isoschizomers for Epigenetic Research in Cotton. International Congress on Agriculture and Forestry Research. 8-10 April, Page; 514-521, Marmaris/TURKEY.

Karaca M., Uygur Gocer E., Ince A.G., Aydın A. 2018. Development of Universal Methylation Spesific Amplified Polymorphism (UMSAP) Assay for Epigenetic Studies of Plants. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 64, Konya/TURKEY.

Ince A.G., Aydın A., Uygur Gocer E., Karaca M. 2018. A modified DNA Extraction Method for Cotton Seed. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 65, Konya/TURKEY.

Ince A.G., Aydın A., Karaca M. 2018. Development of Gene Spesific Methylation Spesific Primer Pair Suitable for Epiallele Identification in Cotton. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 66, Konya/TURKEY.

Aydın A. and Karaca M. 2018. Detection of pima Chromosome Pair in Upland Cotton Genome. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 237, Konya/TURKEY.

Ince A.G., Aydın A., Karaca M. 2018. Mutation Alters DNA Cytosine Methylation in Upland Cotton. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 238, Konya/TURKEY.

Ince A.G., Uygur Gocer E., Aydın A., Karaca M. 2018. Development of Transcribed Tri-Nucleotide-SSR Primer Pairs for Licorice. 1 st International Congress on Plant Biology, 10-12 May/2018, page; page; 239, Konya/TURKEY.

Ince A.G., Karaca M., Aydın A., Uygur Gocer E. 2018. Development of Transcriptomic Markers in Vaccinium corymbosum L. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 242, Konya/TURKEY.

Ince A.G., Aydın A., Uygur Gocer E., Karaca M. 2018. Nuclear and Cytoplasmic Genetic Diversity in Salvia L. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 243, Konya/TURKEY.

Karaca M., Aydın A., Uygur Gocer E., Ince A.G. 2018. Low Chloroplast SSR Diversity in Origanum L. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 244, Konya/TURKEY.

Ince A.G., Karaca M., Aydın A., Uygur Gocer E. 2018. Analysis of EST Databases and Development of E-microsatellite markers for Primula. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 245, Konya/TURKEY.

Karaca M., Uygur Gocer E., Aydın A., Ince A.G. 2018. Mining and Analyzing Passiflora Database for Marker Development. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 246, Konya/TURKEY.

Aydın A., Uygur Gocer E., Karaca M., Ince A.G. 2018. Chlorotypes of Sideritis Species Naturally Occurring in Antalya Region. 1 st International Congress on Plant Biology, 10-12 May/2018, page; 247, Konya/TURKEY.

Karaca, M., Aydin, A. and Ince, A.G. 2018. Development of multiplex PCR assays for methylation sensitive amplification polymorphism for cotton epigenetic studies. International Congress on Agriculture and Animal Sciences. 7-9 November, page; 491-494, Antalya/TURKEY.

Karaca, M., Aydin, A. and Ince, A.G. 2018. Genetic diversity and relationship among cotton varieties growing in three different production areas of Turkey. International Congress on Agriculture and Animal Sciences. 7-9 November, page; 495-501, Antalya/TURKEY.

Aydin, A. and Karaca, M. 2018. Development of multiplex microsatellite assays for cotton genetic and breeding studies. International Congress on Agriculture and Animal Sciences. 7-9 November, page; 502-505, Antalya/TURKEY.

Aydin, A., Karaca, M. and Ince, A.G. 2018. Evaluation of genomic and transcriptomic SSR loci for polymorphism in cotton. International Congress on Agriculture and Animal Sciences. 7-9 November, page; 513-516, Antalya/TURKEY.

Aydin, A., Karaca, M. and Ince, A.G. 2018. Microsatellite diversity within some cotton varieties of G. hirsutum and G. barbadense. International Congress on Agriculture and Animal Sciences. 7-9 November, page; 521-526, Antalya/TURKEY.

Ince, A.G., Karaca, M., Aydin, A. Utilization of EST resources of Perilla frutescens L. for SSR markers development. I. Intenational Congress on Medicinal and Aromatic Plants: “Natural and Healthy Life”, 10-12 Mayıs/2017, sayfa: 1724-1725. Konya/ TURKEY

Karaca, M., Ince, A.G., Aydin, A. Resolutions of minisatellite (DAMD-PCR) and microsatellite (SSR) markers in Salvia L. I. Intenational Congress on Medicinal and Aromatic Plants: “Natural and Healthy Life”, 10-12 Mayıs/2017, sayfa: 1690-1691. Konya/ TURKEY

Karaca, M., Ince, A.G., Aydin, A. Next generation DNA markers in Salvia L. for engineering of high-quality plants with enhanced active ingredients. I. Intenational Congress on Medicinal and Aromatic Plants: “Natural and Healthy Life”, 10-12 Mayıs/2017, Sayfa: 1648-1649. Konya/ TURKEY

Ince A.G., Karaca M., Uygur Göçer E., Aydin A. Genic Microsatellite Primer Pairs in Ipomea batatas (L.) Lam. (Convolvulaceae). VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Karaca M., Ince A.G., Uygur Göçer E., Aydin A. Comparison of Bisulfite Sequencing and Whole Genome Bisulfite Sequencing for Epigenetic Research in Plants. VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Uygur Göçer E., Ince A.G., Aydin A. Karaca M. A set of Multiplex Panel of Microsatellite Markers for Economical and Rapid Molecular Characterization of Maize Varieties. VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Uygur Göçer E., Ince A.G., Aydin A. Karaca M. Investigating the Role of DNA Methylation for Hybrid Vigor (Heterosis) in Maize. VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Aydin A., Ince A.G., Uygur Göçer E., Karaca M. Dominant and Codominant Scoring of Microsatellite Markers Affect Spatial Relationships among Cotton Varieties. VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Karaca M., Inal B., Aydin A., İnce A.G. Using the ITS1 gene region and different alignment tools to reveal the genetic relationship between votton species spreading in different continents. VI. International Molecular Biology and Biotechnology congress, 22-25 Aralık/2017, Afyon/ TURKEY

Karaca M., Ince A.G., Aydin A., EpiTrans: Genom Dizisini Değiştirmeden Üstün Hat Ve Çeşitlerin Geliştirilmesi İçin Yeni Bir Bitki Islah Yöntemi. BIPP, 8 Ekim/2016, Antalya/ TURKEY

Karaca M., Ince A.G., Gocer Uygur E, Aydin A., Organelle genome diversity in species of Origanum and Thymus naturally occurring in Turkey. 4 th International Conference on Biodiversity 15-17 June/2015, Las Vegas, USA.

Aydin A., Karaca M., Ince A.G., Level of DNA methylation in internal transcribed spacers (ITS1, ITS2) and 5.8S rRNA sequences. 4 th International Conference on Biodiversity 15-17 June/2015, Las Vegas, USA.

Aydin A., Gocer Uygur E., Ince A.G., Karaca M., Do short fiber cells of Upland and Pima cotton show different levels of DNA methylation? Global biotechnology Congress 16-19 June/2014, Boston, USA.

Karaca M., Ince A.G., Aydin A., Gocer Uygur E., Cytosine methylation differences between long and short fiber cells of upland cotton. Global biotechnology Congress 16-19 June/2014, Boston, USA.

Ince A.G., Karaca M., Aydin A., Development Of Chimeric Capsicum-Physalis and Solanum-Physalis Plants. II. International Food R&D Brokerage Event, 3-4 June/2013, İzmir, TURKEY.

Aydin A., Karaca M., Ince A.G., Development Of Molecular Diagnostic Kit for Diagnosis of Origanum. II. International Food R&D Brokerage Event, 3-4 June, İzmir/2013, TURKEY.

Karaca M., Ince A.G., Aydin A., Development Of Long-Fiber Cotton With Epigenetic Regulation: a Non Transgenic Approach II. International Food R&D Brokerage Event, 3-4 June, İzmir/2013, TURKEY.

Ulusal Bilimsel Toplantılarda Sunulan ve Bildiri Kitaplarında Basılan Bildiriler:

Aydın A., Uygur Göçer E., DNA Metilasyon Yöntemleri. 11. Tarla Bitkileri Kongresi, 7-10 Eylül/2015, Çanakkale/TÜRKİYE.

İnal, B., Karaca, M., Aydın, A., Ince, A.G. 2012. Değişik Biyoinformatik Araçlar Kullanılarak ITS1, ITS2 Gen Bölgelerinin Substitüsyon Modellerin Ortaya Konulması. 21. ULUSAL BIYOLOJI KONGRESİ, 3-7 Eylül 2012/İZMİR.

İnce, A.G., Aydın, A. Karaca, M. Onus, A.N. 2011.  Moleküler Markır Tekniklerinin Gelişimi ve Bitki Islahı ve Tohumculukta Kullanım Alanları. TÜRKİYE IV. TOHUMCULUK KONGRESİ, 14-17 Haziran 2011/Samsun. s:264-270.

Yazılan Ulusal & Uluslararası Kitaplar:

Yazılan Ulusal & Uluslararası Kitaplardaki Bölümler:

Yönetilen Doktora Tezleri:

Yönetilen Yüksek Lisans Tezleri:

Yüksek Lisans - Doktora

Güz Dönemi

1- Bitki Islahında Genetik Mühendisliği

2- Moleküler Markırlar ve Analiz Yöntemleri

3- Epigenetik

Bahar Dönemi

1- Moleküler Genetik

2- Yeni Nesil Biyoteknolojik Bitki Islah Yöntemleri

3- Yeni Nesil Dizileme: Platformlar ve Kullanım Alanları

“Pamuk (Gossypium L.) Kromozom Substitüsyon Hatlarının Mikrosatellit Markırları Kullanılarak Belirlenmesi” Akdeniz Üniversitesi Bilimsel Araştırma Projeleri (BAP), Yardımcı Araştırıcı 2011.02.0121.052, 2012-2014 (Yüksek Lisans TEZ projesi)

“Pamuk Lif ve Ovül Gelişiminde DNA Stozin Metilasyonunun Epigenetik Regülasyonu Üzerine Bir Araştırma” Bursiyer. COST-TUBİTAK, 112T386, 2012-2014.

“Bazı Bitki Gruplarında CG, CHG, CHH Metilasyon Düzeyleri ve Epigenetik Sonuçları Üzerine Bir Araştırma: in silico ve in vitro Çalışmalar” Bursiyer, TUBİTAK-1001, 113O935, 2015-2017.

“Türkiye'de Tescillenmiş Bazı Ticari Pamuk Çeşitlerinin Moleküler Karakterizasyonu Üzerine Bir Araştırma” Akdeniz Üniversitesi Bilimsel Araştırma Projeleri (BAP), Yardımcı Araştırıcı FDK-2018-2946. (Doktora TEZ projesi)

"Iğdır Koşullarında Fasülye (Phaseolus vulgaris L.) Bitkisinin Adaptasyon Çalışmaları ve Moleküler Karakterizasyonu Üzerine bir Araştırma"  Iğdır Üniversitesi Bilimsel Araştırma Projeleri (BAP), Yürütücü (2019-FBE-A21). 2019-Devam ediyor.

"Soya Bitkisinde Aromatik Amino Asitleri Oluşturan Genlerin Tuz ve Kuraklık Stresi Altında Deneysel ve İn-siliko Olarak Karakterize Edilmesi" Iğdır Üniversitesi Bilimsel Araştırma Projeleri (BAP), Yürütücü (2019-FBE-A18). 2019-Devam ediyor.